EnhancerDB
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  3. rs5780224[chr1:204255235]
Enhancers that have rs5780224[chr1:204255235]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204245511 204275535 enh12577
Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs5780224[chr1:204255235]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 21370352
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 107859792
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 107859793
chr1 204254763 204255312 ZNF274 GTRD no Liver (HepG2) 21370358
chr1 204254763 204255312 ZNF274 GTRD no Liver (HepG2) 107859799
chr1 204255224 204255236 POU3F2 JASPAR yes 34688279
chr1 204255234 204255248 FOXF2 JASPAR yes 34688282
chr1 204255234 204255249 FOXP1 JASPAR yes 34688283
Genes associated with rs5780224[chr1:204255235], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More