EnhancerDB
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  3. rs5798142[chr12:50913591]
Enhancers that have rs5798142[chr12:50913591]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50906745 50954311 enh2346
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr12 50913232 50913640 vista13378
VISTA
Transcript factors that have rs5798142[chr12:50913591]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50913113 50913642 P63 GTRD no Skin (Keratinocyte) 108031196
chr12 50913586 50913606 RREB1 JASPAR yes 82402227
chr12 50913586 50913606 RREB1 JASPAR yes 120837209
chr12 50913587 50913602 STAT2 JASPAR yes 82402228
chr12 50913587 50913602 STAT2 JASPAR yes 120837210
chr12 50913588 50913608 RREB1 JASPAR yes 82402229
chr12 50913588 50913608 RREB1 JASPAR yes 120837211
Genes associated with rs5798142[chr12:50913591], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More