EnhancerDB
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  3. rs5801559[chr12:125008182]
Enhancers that have rs5801559[chr12:125008182]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 124961018 125019902 enh2673
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs5801559[chr12:125008182]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125007801 125008812 TCF7L2 GTRD no Colon (HCT116) 21580955
chr12 125007801 125008812 TCF7L2 GTRD no Colon (HCT116) 108068834
chr12 125008177 125008192 MEF2C JASPAR yes 124388518
chr12 125008177 125008198 IRF1 JASPAR yes 124388519
chr12 125008179 125008194 FOXP1 JASPAR yes 124388520
chr12 125008180 125008195 FOXP1 JASPAR yes 124388521
chr12 125008180 125008201 IRF1 JASPAR yes 124388522
chr12 125008181 125008187 TBP TRANSFAC yes 124388523
chr12 125008181 125008196 FOXP1 JASPAR yes 124388524
chr12 125008181 125008202 IRF1 JASPAR yes 124388525
chr12 125008182 125008197 FOXP1 JASPAR yes 124388526
Genes associated with rs5801559[chr12:125008182], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More