EnhancerDB
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  3. rs58129906[chr19:2527482]
Enhancers that have rs58129906[chr19:2527482]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs58129906[chr19:2527482]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2526984 2530255 ZNF143 GTRD no Epithelial (MCF-7) 21836208
chr19 2526984 2530255 ZNF143 GTRD no Epithelial (MCF-7) 108361202
chr19 2526984 2530255 ZNF143 GTRD no Epithelial (MCF-7) 108361203
chr19 2527095 2530280 ZNF143 GTRD no Epithelial (MCF-7) 21836209
chr19 2527095 2530280 ZNF143 GTRD no Epithelial (MCF-7) 108361204
chr19 2527095 2530280 ZNF143 GTRD no Epithelial (MCF-7) 108361205
chr19 2527463 2527484 ZNF263 JASPAR yes 112069485
chr19 2527476 2527484 TBX5 JASPAR yes 112069486
Genes associated with rs58129906[chr19:2527482], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr19 2427636 2456994 - LMNB2 ENSG00000176619.6 2456994 70488 Breast 0.442835 16784