EnhancerDB
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Enhancers that have rs5820369[chr17:39066214]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39055145 39077753 enh17145
Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs5820369[chr17:39066214]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39065824 39066914 P63 GTRD no Skin (Keratinocyte) 21757205
chr17 39065824 39066914 P63 GTRD no Skin (Keratinocyte) 108257921
chr17 39065887 39066797 P63 GTRD no Skin (Keratinocyte) 21757206
chr17 39065887 39066797 P63 GTRD no Skin (Keratinocyte) 108257922
chr17 39065955 39066745 P63 GTRD no Skin (Keratinocyte) 21757207
chr17 39065955 39066745 P63 GTRD no Skin (Keratinocyte) 108257923
chr17 39066064 39066817 P63 GTRD no Skin (Keratinocyte) 21757208
chr17 39066064 39066817 P63 GTRD no Skin (Keratinocyte) 108257924
chr17 39066153 39066417 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21757209
chr17 39066170 39066460 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21757210
chr17 39066174 39066430 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21757211
chr17 39066192 39066416 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21757212
chr17 39066198 39066216 NR3C1 JASPAR yes 54243289
chr17 39066207 39066487 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21757213
chr17 39066208 39066229 IRF1 JASPAR yes 54243290
chr17 39066210 39066225 STAT2 JASPAR yes 54243291
chr17 39066210 39066231 IRF1 JASPAR yes 54243292
chr17 39066213 39066228 FOXP1 JASPAR yes 54243293
chr17 39066214 39066229 FOXP1 JASPAR yes 54243294
chr17 39066214 39066235 IRF1 JASPAR yes 54243295
Genes associated with rs5820369[chr17:39066214], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More