EnhancerDB
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  3. rs5839555[chr2:235589295]
Enhancers that have rs5839555[chr2:235589295]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 235581405 235605475 enh19346
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Uterus Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs5839555[chr2:235589295]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 235589288 235589298 TBR1 JASPAR yes 81897761
chr2 235589288 235589299 TBX2 JASPAR yes 81897762
chr2 235589290 235589298 TBX15 JASPAR yes 81897763
chr2 235589290 235589298 TBX1 JASPAR yes 81897764
chr2 235589290 235589298 TBX4 JASPAR yes 81897765
chr2 235589290 235589298 TBX5 JASPAR yes 81897766
chr2 235589290 235589302 PKNOX1 JASPAR yes 81897767
chr2 235589290 235589302 PKNOX2 JASPAR yes 81897768
chr2 235589291 235589301 ID4 JASPAR yes 81897769
chr2 235589291 235589301 MSC JASPAR yes 81897770
chr2 235589291 235589301 TCF3 JASPAR yes 81897771
chr2 235589292 235589301 SNAI2 JASPAR yes 81897772
chr2 235589293 235589298 USF2 TRANSFAC yes 81897773
Genes associated with rs5839555[chr2:235589295], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More