EnhancerDB
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  3. rs5839660[chr2:238066400]
Enhancers that have rs5839660[chr2:238066400]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 238060730 238076822 enh19385
Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Blood (OCI-LY7) Stomach Placenta Peripheral Blood (MM.1S) Uterus Neural Stem Cells (H9) Heart
chr2 238066036 238066584 vista35375
VISTA
Transcript factors that have rs5839660[chr2:238066400]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 238066394 238066415 IRF1 JASPAR yes 22240049
chr2 238066394 238066415 IRF1 JASPAR yes 82086079
chr2 238066395 238066416 IRF1 JASPAR yes 22240050
chr2 238066395 238066416 IRF1 JASPAR yes 82086080
chr2 238066396 238066417 IRF1 JASPAR yes 22240051
chr2 238066396 238066417 IRF1 JASPAR yes 82086081
chr2 238066397 238066418 IRF1 JASPAR yes 22240052
chr2 238066397 238066418 IRF1 JASPAR yes 82086082
chr2 238066398 238066413 FOXP1 JASPAR yes 22240053
chr2 238066398 238066413 FOXP1 JASPAR yes 82086083
chr2 238066398 238066419 IRF1 JASPAR yes 22240054
chr2 238066398 238066419 IRF1 JASPAR yes 82086084
chr2 238066399 238066414 FOXP1 JASPAR yes 22240055
chr2 238066399 238066414 FOXP1 JASPAR yes 82086085
chr2 238066399 238066420 IRF1 JASPAR yes 22240056
chr2 238066399 238066420 IRF1 JASPAR yes 82086086
chr2 238066400 238066415 FOXP1 JASPAR yes 22240057
chr2 238066400 238066415 FOXP1 JASPAR yes 82086087
chr2 238066400 238066421 IRF1 JASPAR yes 22240058
chr2 238066400 238066421 IRF1 JASPAR yes 82086088
Genes associated with rs5839660[chr2:238066400], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More