EnhancerDB
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  3. rs5852232[chr3:119865939]
Enhancers that have rs5852232[chr3:119865939]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 119860605 119883439 enh7479
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung
Transcript factors that have rs5852232[chr3:119865939]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 119865936 119866360 CTCF UCSC Txn Factor no Conserved 108530023
chr3 119865938 119865948 HOXA13 JASPAR yes 5196462
Genes associated with rs5852232[chr3:119865939], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More