EnhancerDB
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  3. rs5874417[chr6:13439472]
Enhancers that have rs5874417[chr6:13439472]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 13417125 13443009 enh8962
Brain (SK-N-MC) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Placenta Muscle (Myotube) Lung Muscle (A673) Heart
Transcript factors that have rs5874417[chr6:13439472]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 13439463 13439484 IRF1 JASPAR yes 100031414
chr6 13439467 13439481 STAT1 JASPAR yes 100031415
chr6 13439467 13439482 PRDM1 JASPAR yes 100031416
chr6 13439467 13439482 STAT2 JASPAR yes 100031417
chr6 13439467 13439485 IRF2 JASPAR yes 100031418
chr6 13439468 13439480 IRF1 JASPAR yes 100031419
chr6 13439471 13439476 MYB TRANSFAC yes 100031420
Genes associated with rs5874417[chr6:13439472], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More