EnhancerDB
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  3. rs59540879[chr1:53877297]
Enhancers that have rs59540879[chr1:53877297]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 53871953 53884901 enh26703
Prostate (PC-3) Brain (SK-N-MC) Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Uterus Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Stomach
Transcript factors that have rs59540879[chr1:53877297]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 53877294 53877309 FOXP1 JASPAR yes 28929817
chr1 53877295 53877310 FOXP1 JASPAR yes 28929818
chr1 53877296 53877302 TBP TRANSFAC yes 28929819
chr1 53877296 53877311 FOXP1 JASPAR yes 28929820
chr1 53877297 53877312 FOXP1 JASPAR yes 28929821
chr1 53877297 53877318 IRF1 JASPAR yes 28929822
Genes associated with rs59540879[chr1:53877297], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More