EnhancerDB
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Enhancers that have rs602671[chr1:55327402]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55319988 55335735 enh370
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Liver Astrocyte Bone (Osteoblast) Lung (A549) Stomach Placenta Colon (HCT116) Adrenal Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
chr1 55327144 55327486 vista1670
VISTA
Transcript factors that have rs602671[chr1:55327402]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55327048 55327418 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805362
chr1 55327049 55327409 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805363
chr1 55327091 55327407 EBF1 UCSC Txn Factor no Conserved 107805365
chr1 55327096 55327432 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805367
chr1 55327192 55327482 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805373
chr1 55327243 55327493 RUNX3 UCSC Txn Factor no Conserved 107805374
chr1 55327243 55327493 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805375
chr1 55327391 55327406 RUNX2 JASPAR yes 29002094
chr1 55327391 55327406 RUNX2 JASPAR yes 118293589
chr1 55327392 55327402 RUNX3 JASPAR yes 29002095
chr1 55327392 55327402 RUNX3 JASPAR yes 118293590
chr1 55327399 55327405 HiNF-A TRANSFAC yes 29002096
chr1 55327399 55327405 HiNF-A TRANSFAC yes 118293591
Genes associated with rs602671[chr1:55327402], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More