EnhancerDB
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  3. vista1670[chr1:55327144-55327486]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1670[chr1:55327144-55327486]
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Tissue distribution of vista1670
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Transcription factor that possibly regulate vista1670[chr1:55327144-55327486]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 55327091 55327407 EBF1 UCSC Txn Factor no Conserved 107805365
chr1 55327243 55327493 RUNX3 UCSC Txn Factor no Conserved 107805374
chr1 55327142 55327147 SP1 TRANSFAC yes 29002054
chr1 55327142 55327147 SP1 TRANSFAC yes 118293549
chr1 55327177 55327197 ESR1 JASPAR yes 29002055
chr1 55327177 55327197 ESR1 JASPAR yes 118293550
chr1 55327182 55327197 ESR2 JASPAR yes 29002056
chr1 55327182 55327197 ESR2 JASPAR yes 118293551
chr1 55327183 55327187 LFA1 TRANSFAC yes 29002057
chr1 55327183 55327187 LFA1 TRANSFAC yes 118293552
chr1 55327190 55327194 NFE TRANSFAC yes 29002058
chr1 55327190 55327194 NFE TRANSFAC yes 118293553
chr1 55327214 55327229 TFAP2A JASPAR yes 29002059
chr1 55327214 55327229 TFAP2A JASPAR yes 118293554
chr1 55327215 55327229 EBF1 JASPAR yes 29002060
chr1 55327215 55327229 EBF1 JASPAR yes 118293555
chr1 55327216 55327231 TFAP2C JASPAR yes 29002061
chr1 55327216 55327231 TFAP2C JASPAR yes 118293556
chr1 55327217 55327228 EBF1 JASPAR yes 29002062
chr1 55327217 55327228 EBF1 JASPAR yes 118293557
chr1 55327217 55327231 PLAG1 JASPAR yes 29002063
chr1 55327217 55327231 PLAG1 JASPAR yes 118293558
chr1 55327223 55327228 SP1 TRANSFAC yes 29002064
chr1 55327223 55327228 SP1 TRANSFAC yes 118293559
chr1 55327232 55327242 ELK1 JASPAR yes 29002065
chr1 55327232 55327242 ELK3 JASPAR yes 29002066
chr1 55327232 55327242 ERF JASPAR yes 29002067
chr1 55327232 55327242 ERG JASPAR yes 29002068
chr1 55327232 55327242 ETS1 JASPAR yes 29002069
chr1 55327232 55327242 ETV1 JASPAR yes 29002070
chr1 55327232 55327242 ETV3 JASPAR yes 29002071
chr1 55327232 55327242 ETV4 JASPAR yes 29002072
chr1 55327232 55327242 ETV5 JASPAR yes 29002073
chr1 55327232 55327242 FEV JASPAR yes 29002074
chr1 55327232 55327242 FLI1 JASPAR yes 29002075
chr1 55327232 55327242 ELK1 JASPAR yes 118293560
chr1 55327232 55327242 ELK3 JASPAR yes 118293561
chr1 55327232 55327242 ERF JASPAR yes 118293562
chr1 55327232 55327242 ERG JASPAR yes 118293563
chr1 55327232 55327242 ETS1 JASPAR yes 118293564
chr1 55327232 55327242 ETV1 JASPAR yes 118293565
chr1 55327232 55327242 ETV3 JASPAR yes 118293566
chr1 55327232 55327242 ETV4 JASPAR yes 118293567
chr1 55327232 55327242 ETV5 JASPAR yes 118293568
chr1 55327232 55327242 FEV JASPAR yes 118293569
chr1 55327232 55327242 FLI1 JASPAR yes 118293570
chr1 55327232 55327243 SPDEF JASPAR yes 29002076
chr1 55327232 55327243 SPDEF JASPAR yes 118293571
chr1 55327233 55327242 ELK4 JASPAR yes 29002077
chr1 55327233 55327242 ELK4 JASPAR yes 118293572
chr1 55327244 55327250 SP1 TRANSFAC yes 29002078
chr1 55327244 55327250 SP1 TRANSFAC yes 118293573
chr1 55327263 55327268 H4TF1 TRANSFAC yes 29002079
chr1 55327263 55327268 H4TF1 TRANSFAC yes 118293574
chr1 55327263 55327274 CEBPB JASPAR yes 29002080
chr1 55327263 55327274 CEBPB JASPAR yes 118293575
chr1 55327263 55327276 ATF4 JASPAR yes 29002081
chr1 55327263 55327276 ATF4 JASPAR yes 118293576
chr1 55327264 55327275 CEBPA JASPAR yes 29002082
chr1 55327264 55327275 CEBPA JASPAR yes 118293577
chr1 55327264 55327277 JUN JASPAR yes 29002083
chr1 55327264 55327277 JUN JASPAR yes 118293578
chr1 55327273 55327276 MYB TRANSFAC yes 29002084
chr1 55327273 55327276 MYB TRANSFAC yes 118293579
chr1 55327286 55327290 H4TF2 TRANSFAC yes 29002085
chr1 55327286 55327290 H4TF2 TRANSFAC yes 118293580
chr1 55327335 55327350 MEF2A JASPAR yes 29002086
chr1 55327335 55327350 MEF2A JASPAR yes 118293581
chr1 55327336 55327348 MEF2A JASPAR yes 29002087
chr1 55327336 55327348 MEF2D JASPAR yes 29002088
chr1 55327336 55327348 MEF2A JASPAR yes 118293582
chr1 55327336 55327348 MEF2D JASPAR yes 118293583
chr1 55327337 55327347 MEF2A JASPAR yes 29002089
chr1 55327337 55327347 MEF2A JASPAR yes 118293584
chr1 55327342 55327346 TEAD2 TRANSFAC yes 29002090
chr1 55327342 55327346 TEAD2 TRANSFAC yes 118293585
chr1 55327344 55327347 MYB TRANSFAC yes 29002091
chr1 55327344 55327347 MYB TRANSFAC yes 118293586
chr1 55327363 55327378 RFX5 JASPAR yes 29002092
chr1 55327363 55327378 RFX5 JASPAR yes 118293587
chr1 55327376 55327388 TEAD1 JASPAR yes 29002093
chr1 55327376 55327388 TEAD1 JASPAR yes 118293588
chr1 55327391 55327406 RUNX2 JASPAR yes 29002094
chr1 55327391 55327406 RUNX2 JASPAR yes 118293589
chr1 55327392 55327402 RUNX3 JASPAR yes 29002095
chr1 55327392 55327402 RUNX3 JASPAR yes 118293590
chr1 55327399 55327405 HiNF-A TRANSFAC yes 29002096
chr1 55327399 55327405 HiNF-A TRANSFAC yes 118293591
chr1 55327480 55327486 MZF1 JASPAR yes 29002097
chr1 55327480 55327486 MZF1 JASPAR yes 118293592
SNP sites on vista1670[chr1:55327144-55327486]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 55327144 rs78647471 C G
EBF1 SP1
322693
chr1 55327170 rs566336152 C T
EBF1
322694
chr1 55327239 rs181990904 C T
EBF1 ELK1 ELK3 ELK4 ERF ERG ETS1 ETV1 ETV3 ETV4 ETV5 FEV FLI1 SPDEF
322695
chr1 55327367 rs72673883 C A
EBF1 RFX5 RUNX3
322696
chr1 55327402 rs602671 A C
EBF1 HiNF-A RUNX2 RUNX3
322697
chr1 55327446 rs143383215 G A
RUNX3
322698
Genes possibly regulated by vista1670[chr1:55327144-55327486]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 55222571 55230187 - PARS2 ENSG00000162396.5 55230187 0.7 0.99 737 3043
chr1 55245385 55266940 - TTC22 ENSG00000006555.6 55266940 0.92 1.0 738 39796
chr1 55271736 55307925 + C1orf177 ENSG00000162398.7 55271736 0.98 1.0 739 44592
chr1 55315306 55352891 - DHCR24 ENSG00000116133.7 55352891 0.91 0.99 740 74595
Expression level of Genes
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miRNAs possibly regulated by vista1670[chr1:55327144-55327486]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results