EnhancerDB
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  3. rs60660172[chr19:13959085]
Enhancers that have rs60660172[chr19:13959085]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 13957204 13959386 vista28720
VISTA
Transcript factors that have rs60660172[chr19:13959085]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13958489 13959222 ZNF263 UCSC Txn Factor no Conserved 108390469
chr19 13958690 13959214 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21852518
chr19 13958690 13959214 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108390510
chr19 13958884 13959324 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21852519
chr19 13958884 13959324 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108390511
chr19 13958912 13959296 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852520
chr19 13958912 13959296 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390512
chr19 13958933 13959283 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21852521
chr19 13958933 13959283 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108390513
chr19 13958960 13961534 TCF7L2 GTRD no Colon (HCT116) 21852522
chr19 13958960 13961534 TCF7L2 GTRD no Colon (HCT116) 108390514
chr19 13958960 13961534 TCF7L2 GTRD no Colon (HCT116) 108390515
chr19 13958975 13959265 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108390516
chr19 13958977 13961555 TCF7L2 GTRD no Colon (HCT116) 21852523
chr19 13958977 13961555 TCF7L2 GTRD no Colon (HCT116) 108390517
chr19 13958977 13961555 TCF7L2 GTRD no Colon (HCT116) 108390518
chr19 13958981 13959271 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21852524
chr19 13958981 13959271 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108390519
chr19 13959010 13959437 TCF7L2 GTRD no Colon (HCT116) 21852525
chr19 13959010 13959437 TCF7L2 GTRD no Colon (HCT116) 108390520
chr19 13959035 13961421 ZNF143 GTRD no Epithelial (MCF-7) 21852526
chr19 13959035 13961421 ZNF143 GTRD no Epithelial (MCF-7) 108390521
chr19 13959035 13961421 ZNF143 GTRD no Epithelial (MCF-7) 108390522
chr19 13959042 13959797 TCF7L2 GTRD no Colon (HCT116) 21852527
chr19 13959042 13959797 TCF7L2 GTRD no Colon (HCT116) 108390523
chr19 13959077 13959092 TFAP2A JASPAR yes 70810794
chr19 13959077 13959092 TFAP2C JASPAR yes 70810795
chr19 13959077 13959092 TFAP2A JASPAR yes 112538025
chr19 13959077 13959092 TFAP2C JASPAR yes 112538026
Genes associated with rs60660172[chr19:13959085], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr19 13064972 13068050 - GADD45GIP1 ENSG00000179271.1 13068050 891035 Liver 0.396398 17109