EnhancerDB
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  3. rs6426060[chr1:224384711]
Enhancers that have rs6426060[chr1:224384711]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 224381693 224395855 enh12716
Bone Marrow (K562) Astrocyte Colon (HCT116) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs6426060[chr1:224384711]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 224384369 224384819 TCF7L2 GTRD no Colon (HCT116) 21384194
chr1 224384701 224384716 FOXP1 JASPAR yes 35692531
chr1 224384708 224384714 HiNF-A TRANSFAC yes 35692532
chr1 224384708 224384718 MAX JASPAR yes 35692533
chr1 224384709 224384719 CLOCK JASPAR yes 35692534
chr1 224384709 224384719 MYF6 JASPAR yes 35692535
chr1 224384709 224384719 NEUROG2 JASPAR yes 35692536
Genes associated with rs6426060[chr1:224384711], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 224363458 224381143 + DEGS1 ENSG00000143753.8 224363458 3568 Heart 0.000850011 1879