EnhancerDB
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  3. rs6540574[chr1:206897727]
Enhancers that have rs6540574[chr1:206897727]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 206857225 206902007 enh27440
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs6540574[chr1:206897727]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 206893851 206898069 ZNF143 GTRD no Epithelial (MCF-7) 21372573
chr1 206893851 206898069 ZNF143 GTRD no Epithelial (MCF-7) 107863399
chr1 206894969 206897738 ZNF274 GTRD no Cervix (HeLa-S3) 21372576
chr1 206894969 206897738 ZNF274 GTRD no Cervix (HeLa-S3) 107863402
chr1 206897086 206897874 ZNF274 GTRD no Blood (GM12878) 21372582
chr1 206897086 206897874 ZNF274 GTRD no Blood (GM12878) 107863408
chr1 206897119 206897829 ZNF274 GTRD no Blood (GM12878) 21372585
chr1 206897119 206897829 ZNF274 GTRD no Blood (GM12878) 107863411
chr1 206897181 206897826 TFAP2C UCSC Txn Factor no Conserved 107863421
chr1 206897189 206897849 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21372594
chr1 206897189 206897849 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107863422
chr1 206897259 206897909 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21372603
chr1 206897259 206897909 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107863433
chr1 206897298 206897828 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21372606
chr1 206897298 206897828 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107863436
chr1 206897310 206897814 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21372607
chr1 206897310 206897814 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107863437
chr1 206897310 206897826 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21372608
chr1 206897310 206897826 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107863438
chr1 206897378 206897764 ZNF274 GTRD no Blood (GM12878) 21372611
chr1 206897378 206897764 ZNF274 GTRD no Blood (GM12878) 107863441
chr1 206897387 206897751 ZNF274 GTRD no Blood (GM12878) 21372612
chr1 206897387 206897751 ZNF274 GTRD no Blood (GM12878) 107863442
Genes associated with rs6540574[chr1:206897727], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More