EnhancerDB
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  3. rs6540590[chr1:210547505]
Enhancers that have rs6540590[chr1:210547505]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 210543485 210560329 enh27456
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Brain (SK-N-SH) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Thyroid Uterus Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs6540590[chr1:210547505]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 210547498 210547513 TFAP2C JASPAR yes 35023440
chr1 210547501 210547512 EBF1 JASPAR yes 35023441
chr1 210547502 210547508 MZF1 JASPAR yes 35023442
chr1 210547503 210547512 TFAP2A JASPAR yes 35023443
Genes associated with rs6540590[chr1:210547505], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More