EnhancerDB
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  3. rs6580856[chr12:52545148]
Enhancers that have rs6580856[chr12:52545148]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs6580856[chr12:52545148]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52544269 52545155 ZNF143 GTRD no Epithelial (MCF-7) 21546469
chr12 52544309 52545184 ZNF274 GTRD no Cervix (HeLa-S3) 21546470
chr12 52544943 52545327 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546477
chr12 52545141 52545153 BHLHE23 JASPAR yes 120922436
chr12 52545142 52545152 BHLHE22 JASPAR yes 120922437
chr12 52545142 52545152 NEUROD2 JASPAR yes 120922438
chr12 52545142 52545152 NEUROG2 JASPAR yes 120922439
chr12 52545142 52545152 OLIG1 JASPAR yes 120922440
chr12 52545142 52545152 OLIG2 JASPAR yes 120922441
chr12 52545142 52545152 OLIG3 JASPAR yes 120922442
chr12 52545148 52545163 TFAP2A JASPAR yes 120922443
Genes associated with rs6580856[chr12:52545148], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More