EnhancerDB
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Enhancers that have rs6580857[chr12:52546398]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs6580857[chr12:52546398]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52545722 52546427 POLR2A UCSC Txn Factor no Conserved 108033295
chr12 52545812 52546595 ZBTB33 GTRD no Lung (A549) 108033300
chr12 52545821 52546472 TCF7L2 GTRD no Colon (HCT116) 21546488
chr12 52545821 52546472 TCF7L2 GTRD no Colon (HCT116) 108033302
chr12 52545847 52546819 ZBTB33 GTRD no Lung (A549) 108033310
chr12 52545872 52546561 ZNF274 GTRD no Bone Marrow (K562) 108033313
chr12 52545942 52546626 ZNF274 GTRD no Bone Marrow (K562) 108033337
chr12 52545992 52546529 ZNF274 GTRD no Bone Marrow (K562) 108033347
chr12 52546045 52546697 ZNF143 GTRD no Epithelial (MCF-7) 21546506
chr12 52546045 52546697 ZNF143 GTRD no Epithelial (MCF-7) 108033351
chr12 52546072 52546557 ZNF274 GTRD no Bone Marrow (K562) 108033352
chr12 52546085 52546512 ZNF274 GTRD no Bone Marrow (K562) 108033353
chr12 52546097 52546528 ZNF274 GTRD no Bone Marrow (K562) 108033354
chr12 52546138 52546568 TCF7L2 GTRD no Colon (HCT116) 21546507
chr12 52546150 52547035 ZNF143 GTRD no Epithelial (MCF-7) 21546508
chr12 52546152 52546612 ZNF143 GTRD no Epithelial (MCF-7) 21546509
chr12 52546169 52546718 TCF7L2 GTRD no Colon (HCT116) 21546510
chr12 52546207 52546455 ZNF274 GTRD no Liver (HepG2) 21546511
chr12 52546232 52546816 TCF7L2 GTRD no Colon (HCT116) 21546512
chr12 52546387 52546407 PPARG JASPAR yes 120922612
Genes associated with rs6580857[chr12:52546398], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More