EnhancerDB
  1. Home
  2. SNP
  3. rs6588413[chr1:52017259]
Enhancers that have rs6588413[chr1:52017259]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52012725 52027215 enh11846
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs6588413[chr1:52017259]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52017243 52017259 POU4F2 JASPAR yes 28849347
chr1 52017243 52017259 POU4F3 JASPAR yes 28849348
chr1 52017244 52017259 FOXA1 JASPAR yes 28849350
chr1 52017245 52017259 POU4F1 JASPAR yes 28849352
chr1 52017245 52017260 FOXP1 JASPAR yes 28849353
chr1 52017245 52017260 HNF1A JASPAR yes 28849354
chr1 52017246 52017260 ONECUT2 JASPAR yes 28849356
chr1 52017246 52017260 ONECUT3 JASPAR yes 28849357
chr1 52017247 52017263 POU4F2 JASPAR yes 28849361
chr1 52017247 52017263 POU4F3 JASPAR yes 28849362
chr1 52017249 52017261 FOXI1 JASPAR yes 28849364
chr1 52017249 52017263 POU4F1 JASPAR yes 28849365
chr1 52017249 52017264 HNF1A JASPAR yes 28849366
chr1 52017250 52017262 FOXC2 JASPAR yes 28849367
chr1 52017250 52017263 HNF1B JASPAR yes 28849368
chr1 52017250 52017264 ONECUT3 JASPAR yes 28849369
chr1 52017251 52017262 FOXB1 JASPAR yes 28849370
chr1 52017251 52017262 FOXC1 JASPAR yes 28849371
chr1 52017251 52017262 PROP1 JASPAR yes 28849372
chr1 52017252 52017267 FOXA1 JASPAR yes 28849374
chr1 52017253 52017268 FOXP1 JASPAR yes 28849375
chr1 52017254 52017265 FOXP2 JASPAR yes 28849376
chr1 52017254 52017266 FOXC2 JASPAR yes 28849377
chr1 52017254 52017268 POU1F1 JASPAR yes 28849378
chr1 52017255 52017266 FOXB1 JASPAR yes 28849379
chr1 52017255 52017266 FOXC1 JASPAR yes 28849380
chr1 52017255 52017271 POU4F2 JASPAR yes 28849381
chr1 52017255 52017271 POU4F3 JASPAR yes 28849382
chr1 52017256 52017260 YY1 TRANSFAC yes 28849383
chr1 52017256 52017267 FOXA1 JASPAR yes 28849384
chr1 52017257 52017272 HNF1A JASPAR yes 28849385
chr1 52017259 52017266 NKX3-1 JASPAR yes 28849386
Genes associated with rs6588413[chr1:52017259], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More