EnhancerDB
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  3. rs6598860[chr1:27021684]
Enhancers that have rs6598860[chr1:27021684]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27017585 27036395 enh166
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Blood (T-cell) Epithelial (MCF-7) Stomach Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr1 27021406 27021810 vista882
VISTA
Transcript factors that have rs6598860[chr1:27021684]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27020751 27022506 ZNF274 GTRD no Bone Marrow (K562) 107802550
chr1 27021500 27025301 POLR2A UCSC Txn Factor no Conserved 107802551
chr1 27021677 27021687 EVX2 JASPAR yes 27649179
chr1 27021677 27021687 GSX1 JASPAR yes 27649180
chr1 27021677 27021687 HOXA2 JASPAR yes 27649181
chr1 27021677 27021687 NOTO JASPAR yes 27649182
chr1 27021677 27021687 EVX2 JASPAR yes 118256132
chr1 27021677 27021687 GSX1 JASPAR yes 118256133
chr1 27021677 27021687 HOXA2 JASPAR yes 118256134
chr1 27021677 27021687 NOTO JASPAR yes 118256135
chr1 27021682 27021691 THAP1 JASPAR yes 27649183
chr1 27021682 27021691 THAP1 JASPAR yes 118256136
chr1 27021683 27021702 PAX5 JASPAR yes 27649184
chr1 27021683 27021702 PAX5 JASPAR yes 118256137
Genes associated with rs6598860[chr1:27021684], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More