EnhancerDB
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  3. rs6667478[chr1:180494273]
Enhancers that have rs6667478[chr1:180494273]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 180482964 180504974 enh12423
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
chr1 180494187 180494417 vista4077
VISTA
Transcript factors that have rs6667478[chr1:180494273]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 180494227 180494903 ZBTB33 GTRD no Lung (A549) 107847810
chr1 180494262 180494273 ESRRA JASPAR yes 33521057
chr1 180494262 180494273 ESRRA JASPAR yes 118407004
chr1 180494272 180494285 TFAP2A JASPAR yes 33521059
chr1 180494272 180494285 TFAP2B JASPAR yes 33521060
chr1 180494272 180494285 TFAP2C JASPAR yes 33521061
chr1 180494272 180494285 TFAP2A JASPAR yes 118407006
chr1 180494272 180494285 TFAP2B JASPAR yes 118407007
chr1 180494272 180494285 TFAP2C JASPAR yes 118407008
Genes associated with rs6667478[chr1:180494273], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More