EnhancerDB
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  3. rs6669642[chr1:229343082]
Enhancers that have rs6669642[chr1:229343082]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229330645 229348935 enh12763
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Ovary Blood (T-cell) Esophagus Brain (SK-N-MC) Stomach Muscle (A673) Placenta Uterus Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs6669642[chr1:229343082]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229340812 229343905 ZNF143 GTRD no Epithelial (MCF-7) 21390638
chr1 229340812 229343905 ZNF143 GTRD no Epithelial (MCF-7) 107877861
chr1 229341112 229343660 ZNF274 GTRD no Bone Marrow (K562) 107877867
chr1 229341112 229343833 ZNF274 GTRD no Bone Marrow (K562) 107877868
chr1 229341115 229343944 ZNF274 GTRD no Bone Marrow (K562) 107877869
chr1 229341117 229343715 ZNF274 GTRD no Bone Marrow (K562) 107877870
chr1 229341125 229343786 ZNF274 GTRD no Bone Marrow (K562) 107877871
chr1 229341154 229343650 ZNF274 GTRD no Bone Marrow (K562) 107877875
chr1 229341155 229343869 ZNF274 GTRD no Liver (HepG2) 21390641
chr1 229341155 229343869 ZNF274 GTRD no Liver (HepG2) 107877876
chr1 229341176 229343685 STAT3 GTRD no Blood (OCI-LY7) 107877879
chr1 229341181 229343531 ZBTB33 GTRD no Lung (A549) 107877882
chr1 229341190 229343442 ZNF274 GTRD no Liver (HepG2) 21390643
chr1 229341190 229343442 ZNF274 GTRD no Liver (HepG2) 107877884
chr1 229341193 229343881 ZBTB33 GTRD no Lung (A549) 107877887
chr1 229341197 229343831 ZNF274 GTRD no Blood (GM12878) 107877889
chr1 229341205 229343541 ZNF274 GTRD no Bone Marrow (K562) 107877891
chr1 229341218 229343572 ZNF274 GTRD no Blood (GM12878) 107877897
chr1 229341234 229343794 ZNF274 GTRD no Blood (GM12878) 107877899
chr1 229341245 229343495 ZNF143 GTRD no Epithelial (MCF-7) 21390652
chr1 229341245 229343495 ZNF143 GTRD no Epithelial (MCF-7) 107877905
chr1 229341279 229343572 ZNF274 GTRD no Bone Marrow (K562) 107877914
chr1 229341281 229343459 ZNF274 GTRD no Bone Marrow (K562) 107877915
chr1 229341289 229343504 ZNF274 GTRD no Bone Marrow (K562) 107877919
chr1 229341300 229343459 ZNF274 GTRD no Bone Marrow (K562) 107877923
chr1 229341304 229343439 ZNF274 GTRD no Blood (GM12878) 107877924
chr1 229341313 229343986 ZNF274 GTRD no Liver (HepG2) 21390661
chr1 229341313 229343986 ZNF274 GTRD no Liver (HepG2) 107877926
chr1 229341330 229343419 TCF7L2 GTRD no Colon (HCT116) 107877929
chr1 229341786 229343506 ZNF274 GTRD no Liver (HepG2) 21390670
chr1 229341832 229343451 ZNF143 GTRD no Epithelial (MCF-7) 21390673
chr1 229341850 229343518 ZNF274 GTRD no Liver (HepG2) 21390676
chr1 229341859 229343541 ZNF274 GTRD no Liver (HepG2) 21390677
chr1 229341867 229343420 ZNF274 GTRD no Cervix (HeLa-S3) 21390678
chr1 229341888 229343525 ZNF143 GTRD no Epithelial (MCF-7) 21390679
chr1 229341913 229343495 ZNF274 GTRD no Liver (HepG2) 21390680
chr1 229341919 229343426 ZNF274 GTRD no Liver (HepG2) 21390681
chr1 229341937 229343431 ZNF143 GTRD no Epithelial (MCF-7) 21390683
chr1 229341944 229343453 ZNF143 GTRD no Epithelial (MCF-7) 21390684
chr1 229341950 229343426 ZNF274 GTRD no Liver (HepG2) 21390685
chr1 229341993 229343441 SOX2 GTRD no Neural Stem Cells (H9) 21390686
chr1 229342016 229343616 ZNF274 GTRD no Cervix (HeLa-S3) 21390687
chr1 229342057 229343586 ZNF143 GTRD no Epithelial (MCF-7) 21390688
chr1 229342070 229343542 ZNF143 GTRD no Epithelial (MCF-7) 21390690
chr1 229342121 229343867 ZNF274 GTRD no Liver (HepG2) 21390693
chr1 229342137 229343457 ZNF274 GTRD no Cervix (HeLa-S3) 21390694
chr1 229342138 229343098 ZNF274 GTRD no Liver (HepG2) 21390695
chr1 229342208 229343565 ZNF274 GTRD no Liver (HepG2) 21390696
chr1 229342211 229343426 ZNF274 GTRD no Liver (HepG2) 21390697
chr1 229342246 229343433 ZNF274 GTRD no Liver (HepG2) 21390700
chr1 229342270 229343474 ZNF143 GTRD no Epithelial (MCF-7) 21390704
chr1 229342464 229343283 ZNF274 GTRD no Liver (HepG2) 21390708
chr1 229342515 229343554 ZNF143 GTRD no Epithelial (MCF-7) 21390709
chr1 229342523 229343531 ZNF274 GTRD no Liver (HepG2) 21390710
chr1 229342613 229343510 ZNF274 GTRD no Cervix (HeLa-S3) 21390711
chr1 229342662 229343444 ZNF143 GTRD no Epithelial (MCF-7) 21390713
chr1 229342725 229343432 ZNF143 GTRD no Epithelial (MCF-7) 21390716
chr1 229342746 229343427 ZNF143 GTRD no Epithelial (MCF-7) 21390717
chr1 229342756 229343808 ZNF274 GTRD no Cervix (HeLa-S3) 21390718
chr1 229342763 229343429 ZNF274 GTRD no Cervix (HeLa-S3) 21390719
chr1 229342924 229343825 GATA3 GTRD no Thymus 21390720
chr1 229343031 229343675 ZNF143 GTRD no Epithelial (MCF-7) 21390721
chr1 229343081 229343086 GATA2 JASPAR yes 35974281
Genes associated with rs6669642[chr1:229343082], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More