EnhancerDB
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  3. rs6678605[chr1:209594536]
Enhancers that have rs6678605[chr1:209594536]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs6678605[chr1:209594536]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209593856 209594909 ZNF143 GTRD no Epithelial (MCF-7) 21375398
chr1 209594168 209594760 ZNF143 GTRD no Epithelial (MCF-7) 21375403
chr1 209594215 209594821 ZNF143 GTRD no Epithelial (MCF-7) 21375404
chr1 209594240 209594786 ZNF143 GTRD no Epithelial (MCF-7) 21375405
chr1 209594434 209594780 ZNF143 GTRD no Epithelial (MCF-7) 21375406
chr1 209594488 209594737 ZNF143 GTRD no Epithelial (MCF-7) 21375407
chr1 209594490 209594792 ZBTB33 GTRD no Lung (A549) 21375408
chr1 209594515 209594769 ZBTB33 GTRD no Lung (A549) 21375409
chr1 209594529 209594543 EBF1 JASPAR yes 34974375
chr1 209594531 209594540 TFAP2A JASPAR yes 34974376
chr1 209594531 209594542 EBF1 JASPAR yes 34974377
chr1 209594534 209594554 TP53 JASPAR yes 34974378
chr1 209594535 209594540 TFAP2A TRANSFAC yes 34974379
chr1 209594535 209594541 MZF1 JASPAR yes 34974380
Genes associated with rs6678605[chr1:209594536], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More