EnhancerDB
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  3. rs6682808[chr1:229255030]
Enhancers that have rs6682808[chr1:229255030]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229225622 229286295 enh12760
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Ovary Esophagus Liver Blood (T-cell) Blood (OCI-LY7) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs6682808[chr1:229255030]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229254641 229255636 ZNF274 GTRD no Cervix (HeLa-S3) 21390151
chr1 229254808 229255410 ZNF143 GTRD no Epithelial (MCF-7) 21390152
chr1 229254812 229255427 ZNF143 GTRD no Epithelial (MCF-7) 21390153
chr1 229254822 229255277 ZNF143 GTRD no Epithelial (MCF-7) 21390154
chr1 229254828 229255321 ZNF274 GTRD no Liver (HepG2) 21390155
chr1 229254828 229255329 ZNF143 GTRD no Epithelial (MCF-7) 21390156
chr1 229254834 229255456 ZNF274 GTRD no Liver (HepG2) 21390157
chr1 229254835 229255457 ZNF143 GTRD no Epithelial (MCF-7) 21390158
chr1 229254902 229255389 ZNF274 GTRD no Cervix (HeLa-S3) 21390159
chr1 229254912 229255202 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390160
chr1 229254957 229255230 ZNF274 GTRD no Cervix (HeLa-S3) 21390161
chr1 229254960 229255359 ZNF274 GTRD no Cervix (HeLa-S3) 21390162
chr1 229254969 229255245 ZNF274 GTRD no Liver (HepG2) 21390163
chr1 229254975 229255204 ZNF143 GTRD no Epithelial (MCF-7) 21390164
chr1 229254987 229255203 ZNF274 GTRD no Liver (HepG2) 21390165
chr1 229255023 229255034 ESRRA JASPAR yes 35963072
chr1 229255023 229255034 ESRRB JASPAR yes 35963073
chr1 229255023 229255036 NR2F1 JASPAR yes 35963074
chr1 229255025 229255033 NR4A2 JASPAR yes 35963075
chr1 229255027 229255031 ESR1 TRANSFAC yes 35963076
chr1 229255027 229255037 MAX JASPAR yes 35963077
chr1 229255027 229255038 USF1 JASPAR yes 35963078
chr1 229255027 229255038 USF2 JASPAR yes 35963079
chr1 229255028 229255038 BHLHE40 JASPAR yes 35963080
chr1 229255028 229255038 BHLHE41 JASPAR yes 35963081
chr1 229255028 229255038 MAX JASPAR yes 35963082
chr1 229255028 229255038 MLXIPL JASPAR yes 35963083
chr1 229255028 229255038 MLX JASPAR yes 35963084
chr1 229255028 229255038 MNT JASPAR yes 35963085
chr1 229255028 229255038 SREBF2 JASPAR yes 35963086
chr1 229255028 229255038 TFE3 JASPAR yes 35963087
chr1 229255028 229255038 TFEB JASPAR yes 35963088
chr1 229255028 229255038 TFEC JASPAR yes 35963089
chr1 229255028 229255039 USF1 JASPAR yes 35963090
chr1 229255028 229255039 USF2 JASPAR yes 35963091
chr1 229255029 229255039 MAX JASPAR yes 35963092
chr1 229255030 229255035 MYC TRANSFAC yes 35963093
chr1 229255030 229255035 USF1 TRANSFAC yes 35963094
chr1 229255030 229255035 USF2 TRANSFAC yes 35963095
chr1 229255030 229255037 USF1 JASPAR yes 35963096
Genes associated with rs6682808[chr1:229255030], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 228294380 228297013 - MRPL55 ENSG00000162910.14 228297013 958017 Liver 0.256916 1914