EnhancerDB
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  3. rs6688116[chr1:203492121]
Enhancers that have rs6688116[chr1:203492121]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs6688116[chr1:203492121]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203491557 203493112 ZNF143 GTRD no Epithelial (MCF-7) 21369215
chr1 203491703 203492527 ZNF143 GTRD no Epithelial (MCF-7) 21369216
chr1 203492116 203492131 FOXP1 JASPAR yes 34635209
chr1 203492117 203492128 FOXA1 JASPAR yes 34635210
chr1 203492117 203492128 FOXH1 JASPAR yes 34635211
chr1 203492118 203492130 FOXC2 JASPAR yes 34635212
chr1 203492119 203492130 FOXP2 JASPAR yes 34635213
chr1 203492119 203492131 FOXI1 JASPAR yes 34635214
chr1 203492119 203492133 ONECUT3 JASPAR yes 34635215
chr1 203492121 203492129 FOXG1 JASPAR yes 34635216
chr1 203492121 203492129 FOXO3 JASPAR yes 34635217
chr1 203492121 203492130 SRY JASPAR yes 34635218
Genes associated with rs6688116[chr1:203492121], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More