EnhancerDB
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  3. rs6688638[chr1:16505304]
Enhancers that have rs6688638[chr1:16505304]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6688638[chr1:16505304]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16505296 16505310 EBF1 JASPAR yes 27031812
chr1 16505297 16505308 EBF1 JASPAR yes 27031813
chr1 16505298 16505309 EBF1 JASPAR yes 27031814
chr1 16505298 16505311 TFAP2A JASPAR yes 27031815
chr1 16505298 16505311 TFAP2B JASPAR yes 27031816
chr1 16505298 16505311 TFAP2C JASPAR yes 27031817
chr1 16505303 16505318 NR2C2 JASPAR yes 27031818
chr1 16505304 16505314 SP1 JASPAR yes 27031819
Genes associated with rs6688638[chr1:16505304], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More