EnhancerDB
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  3. rs6690563[chr1:201430274]
Enhancers that have rs6690563[chr1:201430274]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6690563[chr1:201430274]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 21364083
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 107856210
chr1 201429342 201430593 TCF7L2 GTRD no Colon (HCT116) 21364084
chr1 201429352 201430575 ZNF143 GTRD no Epithelial (MCF-7) 21364085
chr1 201429375 201430457 ZNF143 GTRD no Epithelial (MCF-7) 21364086
chr1 201429534 201430422 ZNF143 GTRD no Epithelial (MCF-7) 21364087
chr1 201429556 201430372 TCF7L2 GTRD no Colon (HCT116) 21364088
chr1 201429912 201430334 TCF7L2 GTRD no Colon (HCT116) 21364089
chr1 201430131 201430701 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21364090
chr1 201430158 201430642 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364091
chr1 201430180 201430720 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364092
chr1 201430220 201430704 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364093
chr1 201430242 201430706 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21364094
chr1 201430246 201430630 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364095
chr1 201430250 201430606 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21364096
chr1 201430257 201430617 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364097
chr1 201430271 201430286 FOXP1 JASPAR yes 34496273
chr1 201430272 201430283 FOXA1 JASPAR yes 34496274
chr1 201430272 201430642 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364098
chr1 201430274 201430285 FOXP2 JASPAR yes 34496275
chr1 201430274 201430532 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364099
Genes associated with rs6690563[chr1:201430274], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More