EnhancerDB
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  3. rs6690780[chr1:201430494]
Enhancers that have rs6690780[chr1:201430494]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs6690780[chr1:201430494]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 21364083
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 107856210
chr1 201429342 201430593 TCF7L2 GTRD no Colon (HCT116) 21364084
chr1 201429352 201430575 ZNF143 GTRD no Epithelial (MCF-7) 21364085
chr1 201430131 201430701 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21364090
chr1 201430158 201430642 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364091
chr1 201430180 201430720 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364092
chr1 201430220 201430704 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364093
chr1 201430242 201430706 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21364094
chr1 201430246 201430630 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364095
chr1 201430250 201430606 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21364096
chr1 201430257 201430617 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364097
chr1 201430272 201430642 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364098
chr1 201430274 201430532 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364099
chr1 201430277 201430617 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364100
chr1 201430277 201430673 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364101
chr1 201430278 201430557 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364102
chr1 201430279 201430735 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364103
chr1 201430282 201430612 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364104
chr1 201430285 201430575 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364105
chr1 201430295 201430671 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364106
chr1 201430299 201430575 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21364107
chr1 201430312 201430642 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364108
chr1 201430317 201430577 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21364109
chr1 201430326 201430696 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364110
chr1 201430337 201430647 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21364111
chr1 201430339 201430843 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364112
chr1 201430343 201430635 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21364113
chr1 201430346 201431006 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364114
chr1 201430359 201430715 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364115
chr1 201430362 201430652 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364116
chr1 201430365 201430595 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364117
chr1 201430382 201430642 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364119
chr1 201430385 201430515 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364120
chr1 201430410 201430591 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364121
chr1 201430412 201430796 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21364122
chr1 201430420 201431422 ZBTB33 GTRD no Brain (SK-N-SH) 21364123
chr1 201430420 201431422 ZBTB33 GTRD no Brain (SK-N-SH) 107856211
chr1 201430423 201430679 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364124
chr1 201430443 201431425 ZBTB33 GTRD no Brain (SK-N-SH) 21364125
chr1 201430443 201431425 ZBTB33 GTRD no Brain (SK-N-SH) 107856212
chr1 201430451 201430707 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21364126
chr1 201430472 201430782 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21364127
chr1 201430493 201430497 LFA1 TRANSFAC yes 34496324
chr1 201430493 201430689 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364128
Genes associated with rs6690780[chr1:201430494], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More