EnhancerDB
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  3. rs71572889[chr1:224390563]
Enhancers that have rs71572889[chr1:224390563]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 224381693 224395855 enh12716
Bone Marrow (K562) Astrocyte Colon (HCT116) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs71572889[chr1:224390563]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 224390131 224391897 TEF1 GTRD no Bone (Osteoblast) 21384202
chr1 224390542 224391108 ZNF274 GTRD no Bone Marrow (K562) 21384203
chr1 224390557 224390578 IRF1 JASPAR yes 35693333
chr1 224390558 224390573 FOXP1 JASPAR yes 35693334
chr1 224390558 224390579 IRF1 JASPAR yes 35693335
chr1 224390559 224390570 FOXP2 JASPAR yes 35693336
chr1 224390559 224390574 STAT2 JASPAR yes 35693337
chr1 224390559 224390580 IRF1 JASPAR yes 35693338
chr1 224390560 224390575 FOXP1 JASPAR yes 35693339
chr1 224390562 224390577 FOXP1 JASPAR yes 35693340
chr1 224390563 224390578 FOXP1 JASPAR yes 35693341
Genes associated with rs71572889[chr1:224390563], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More