EnhancerDB
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  3. rs729402[chr1:16489106]
Enhancers that have rs729402[chr1:16489106]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 16489021 16489207 vista522
VISTA
Transcript factors that have rs729402[chr1:16489106]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16488711 16489231 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107802223
chr1 16489094 16489106 HINFP JASPAR yes 27029462
chr1 16489094 16489106 HINFP JASPAR yes 118238748
chr1 16489106 16489111 TFAP2A TRANSFAC yes 27029464
chr1 16489106 16489111 TFAP2A TRANSFAC yes 118238750
chr1 16489106 16489112 MZF1 JASPAR yes 27029465
chr1 16489106 16489112 MZF1 JASPAR yes 118238751
Genes associated with rs729402[chr1:16489106], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More