EnhancerDB
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  3. rs742678[chr1:209588509]
Enhancers that have rs742678[chr1:209588509]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs742678[chr1:209588509]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209585538 209588619 ZBTB33 GTRD no Brain (SK-N-SH) 107865749
chr1 209587177 209588554 ZNF274 GTRD no Cervix (HeLa-S3) 21375312
chr1 209587280 209589178 ZNF274 GTRD no Cervix (HeLa-S3) 21375313
chr1 209587399 209588527 ZNF143 GTRD no Epithelial (MCF-7) 21375318
chr1 209587432 209588804 AR GTRD no Prostate (PC-3) 21375321
chr1 209587433 209588554 ZNF274 GTRD no Cervix (HeLa-S3) 21375322
chr1 209587648 209588533 ZNF274 GTRD no Cervix (HeLa-S3) 21375348
chr1 209587730 209588596 ZNF274 GTRD no Cervix (HeLa-S3) 21375359
chr1 209587798 209588549 ZNF274 GTRD no Cervix (HeLa-S3) 21375367
chr1 209588329 209589428 ZNF274 GTRD no Cervix (HeLa-S3) 21375371
chr1 209588329 209589428 ZNF274 GTRD no Cervix (HeLa-S3) 107865764
chr1 209588497 209588518 ZNF263 JASPAR yes 34973640
chr1 209588506 209588517 E2F6 JASPAR yes 34973641
Genes associated with rs742678[chr1:209588509], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More