EnhancerDB
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  3. rs74550090[chr17:55456558]
Enhancers that have rs74550090[chr17:55456558]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55440094 55459475 enh17241
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs74550090[chr17:55456558]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55448417 55457368 ZBTB33 GTRD no Lung (A549) 108273940
chr17 55448498 55457254 ZBTB33 GTRD no Lung (A549) 108273941
chr17 55454241 55457413 TEF1 GTRD no Bone (Osteoblast) 108273942
chr17 55454357 55457240 ZBTB33 GTRD no Lung (A549) 108273943
chr17 55456263 55456678 ZNF274 GTRD no Bone Marrow (K562) 21773484
chr17 55456263 55456678 ZNF274 GTRD no Bone Marrow (K562) 108273944
chr17 55456278 55456738 ZNF143 GTRD no Epithelial (MCF-7) 21773485
chr17 55456278 55456738 ZNF143 GTRD no Epithelial (MCF-7) 108273945
chr17 55456290 55456687 ZNF274 GTRD no Liver (HepG2) 21773486
chr17 55456290 55456687 ZNF274 GTRD no Liver (HepG2) 108273946
chr17 55456310 55456762 ZNF274 GTRD no Cervix (HeLa-S3) 21773487
chr17 55456310 55456762 ZNF274 GTRD no Cervix (HeLa-S3) 108273947
chr17 55456342 55456720 ZNF274 GTRD no Liver (HepG2) 21773488
chr17 55456342 55456720 ZNF274 GTRD no Liver (HepG2) 108273948
chr17 55456442 55457181 ZNF274 GTRD no Blood (GM12878) 21773489
chr17 55456442 55457181 ZNF274 GTRD no Blood (GM12878) 108273949
chr17 55456548 55456558 SREBF1 JASPAR yes 54948702
chr17 55456553 55456563 SREBF1 JASPAR yes 54948703
chr17 55456553 55456563 SREBF2 JASPAR yes 54948704
Genes associated with rs74550090[chr17:55456558], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 55333212 55762046 + MSI2 ENSG00000153944.6 55333212 0 Esophagus 0.30848 16072