EnhancerDB
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  3. rs7543969[chr1:25029118]
Enhancers that have rs7543969[chr1:25029118]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25026945 25066186 enh139
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs7543969[chr1:25029118]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25017364 25039918 ZNF274 GTRD no Blood (GM12878) 21325292
chr1 25029109 25029122 NFKB2 JASPAR yes 27520160
chr1 25029110 25029121 NFKB1 JASPAR yes 27520161
chr1 25029111 25029121 NFKB1 JASPAR yes 27520163
chr1 25029117 25029123 MZF1 JASPAR yes 27520164
Genes associated with rs7543969[chr1:25029118], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More