EnhancerDB
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  3. rs7553988[chr1:201421082]
Enhancers that have rs7553988[chr1:201421082]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs7553988[chr1:201421082]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201420508 201421496 ZNF143 GTRD no Epithelial (MCF-7) 21364041
chr1 201420533 201421477 ZNF143 GTRD no Epithelial (MCF-7) 21364042
chr1 201420622 201421378 TCF7L2 GTRD no Colon (HCT116) 21364043
chr1 201420937 201421398 TCF7L2 GTRD no Colon (HCT116) 21364044
chr1 201421044 201421653 ZNF143 GTRD no Epithelial (MCF-7) 21364045
chr1 201421080 201421090 MAX JASPAR yes 34494986
chr1 201421080 201421095 AR JASPAR yes 34494987
Genes associated with rs7553988[chr1:201421082], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More