EnhancerDB
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  3. rs77551119[chr12:52540501]
Enhancers that have rs77551119[chr12:52540501]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
chr12 52540237 52540565 vista13444
VISTA
Transcript factors that have rs77551119[chr12:52540501]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033122
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033123
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033124
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033125
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546373
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033126
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033127
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033128
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033129
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 21546376
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 108033132
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 108033133
chr12 52540315 52540919 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546381
chr12 52540315 52540919 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033139
chr12 52540365 52541062 TCF7L2 GTRD no Colon (HCT116) 21546382
chr12 52540365 52541062 TCF7L2 GTRD no Colon (HCT116) 108033140
chr12 52540365 52541062 TCF7L2 GTRD no Colon (HCT116) 108033141
chr12 52540453 52540871 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546383
chr12 52540453 52540871 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033142
chr12 52540454 52541110 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033143
chr12 52540454 52541110 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033144
chr12 52540492 52540505 NFKB1 JASPAR yes 82405625
chr12 52540492 52540505 NFKB1 JASPAR yes 120921752
chr12 52540493 52540503 RELA JASPAR yes 82405626
chr12 52540493 52540503 RELA JASPAR yes 120921753
chr12 52540493 52540504 NFKB1 JASPAR yes 82405627
chr12 52540493 52540504 NFKB1 JASPAR yes 120921754
chr12 52540493 52540506 NFKB1 JASPAR yes 82405628
chr12 52540493 52540506 NFKB2 JASPAR yes 82405629
chr12 52540493 52540506 NFKB1 JASPAR yes 120921755
chr12 52540493 52540506 NFKB2 JASPAR yes 120921756
chr12 52540499 52540513 ZIC1 JASPAR yes 82405631
chr12 52540499 52540513 ZIC1 JASPAR yes 120921758
chr12 52540499 52540514 ZIC3 JASPAR yes 82405632
chr12 52540499 52540514 ZIC4 JASPAR yes 82405633
chr12 52540499 52540514 ZIC3 JASPAR yes 120921759
chr12 52540499 52540514 ZIC4 JASPAR yes 120921760
Genes associated with rs77551119[chr12:52540501], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More