EnhancerDB
  1. Home
  2. SNP
  3. rs78296860[chr2:38919957]
Enhancers that have rs78296860[chr2:38919957]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs78296860[chr2:38919957]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38919942 38919963 IRF1 JASPAR yes 73165350
chr2 38919946 38919961 PRDM1 JASPAR yes 73165351
chr2 38919946 38919961 STAT2 JASPAR yes 73165352
chr2 38919948 38919969 IRF1 JASPAR yes 73165353
chr2 38919951 38919965 IRF8 JASPAR yes 73165354
chr2 38919952 38919966 SPI1 JASPAR yes 73165355
chr2 38919952 38919967 STAT2 JASPAR yes 73165356
chr2 38919952 38919970 IRF2 JASPAR yes 73165357
Genes associated with rs78296860[chr2:38919957], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More