EnhancerDB
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  3. rs78449543[chr1:201430731]
Enhancers that have rs78449543[chr1:201430731]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs78449543[chr1:201430731]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 21364083
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 107856210
chr1 201430279 201430735 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364103
chr1 201430339 201430843 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21364112
chr1 201430346 201431006 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364114
chr1 201430412 201430796 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21364122
chr1 201430420 201431422 ZBTB33 GTRD no Brain (SK-N-SH) 21364123
chr1 201430420 201431422 ZBTB33 GTRD no Brain (SK-N-SH) 107856211
chr1 201430443 201431425 ZBTB33 GTRD no Brain (SK-N-SH) 21364125
chr1 201430443 201431425 ZBTB33 GTRD no Brain (SK-N-SH) 107856212
chr1 201430472 201430782 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21364127
chr1 201430513 201430989 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364129
chr1 201430584 201431264 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364130
chr1 201430584 201431264 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856213
chr1 201430594 201431244 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364131
chr1 201430594 201431244 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856214
chr1 201430594 201431444 SMARCC1 UCSC Txn Factor no Conserved 107856215
chr1 201430599 201431203 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364132
chr1 201430599 201431203 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856216
chr1 201430600 201431363 MYOD GTRD no Muscle (Myoblast) 21364133
chr1 201430600 201431363 MYOD GTRD no Muscle (Myoblast) 107856217
chr1 201430605 201431115 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364134
chr1 201430605 201431115 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856218
chr1 201430646 201431146 ZBTB33 GTRD no Brain (SK-N-SH) 21364135
chr1 201430646 201431146 ZBTB33 GTRD no Brain (SK-N-SH) 107856219
chr1 201430681 201431150 ZBTB33 GTRD no Brain (SK-N-SH) 21364136
chr1 201430681 201431150 ZBTB33 GTRD no Brain (SK-N-SH) 107856220
chr1 201430727 201430731 H1TF2 TRANSFAC yes 34496343
chr1 201430727 201430731 NFE TRANSFAC yes 34496344
chr1 201430727 201430731 SRF TRANSFAC yes 34496345
Genes associated with rs78449543[chr1:201430731], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More