EnhancerDB
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  3. rs78478898[chr1:28750709]
Enhancers that have rs78478898[chr1:28750709]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28732865 28757735 enh186
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs78478898[chr1:28750709]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28750267 28752212 ZNF274 GTRD no Bone Marrow (K562) 107802660
chr1 28750694 28750710 POU4F3 JASPAR yes 27769767
chr1 28750697 28750709 FOXC2 JASPAR yes 27769768
chr1 28750698 28750709 FOXC1 JASPAR yes 27769769
chr1 28750698 28750719 IRF1 JASPAR yes 27769770
chr1 28750700 28750715 FOXP1 JASPAR yes 27769772
chr1 28750703 28750718 MEF2A JASPAR yes 27769773
chr1 28750704 28750719 FOXP1 JASPAR yes 27769774
chr1 28750704 28750719 MEF2C JASPAR yes 27769775
chr1 28750705 28750717 FOXC2 JASPAR yes 27769776
chr1 28750705 28750717 MEF2A JASPAR yes 27769777
chr1 28750705 28750717 MEF2B JASPAR yes 27769778
chr1 28750705 28750717 MEF2D JASPAR yes 27769779
chr1 28750706 28750716 MEF2A JASPAR yes 27769780
chr1 28750707 28750711 YY1 TRANSFAC yes 27769781
chr1 28750708 28750720 IRF1 JASPAR yes 27769782
chr1 28750708 28750722 IRF7 JASPAR yes 27769783
chr1 28750709 28750724 MEF2A JASPAR yes 27769784
Genes associated with rs78478898[chr1:28750709], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More