EnhancerDB
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  3. rs78489413[chr19:6056539]
Enhancers that have rs78489413[chr19:6056539]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 6055365 6071655 enh17885
Bone Marrow (K562) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs78489413[chr19:6056539]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 6055956 6057684 ZNF143 GTRD no Epithelial (MCF-7) 21844082
chr19 6055956 6057684 ZNF143 GTRD no Epithelial (MCF-7) 108376373
chr19 6056010 6056869 ZNF143 GTRD no Epithelial (MCF-7) 21844083
chr19 6056010 6056869 ZNF143 GTRD no Epithelial (MCF-7) 108376374
chr19 6056031 6057780 TCF7L2 GTRD no Colon (HCT116) 108376375
chr19 6056137 6056876 ZBTB33 GTRD no Lung (A549) 108376376
chr19 6056148 6056871 ZNF143 GTRD no Epithelial (MCF-7) 21844084
chr19 6056148 6056871 ZNF143 GTRD no Epithelial (MCF-7) 108376377
chr19 6056234 6056958 ZNF274 GTRD no Liver (HepG2) 21844085
chr19 6056234 6056958 ZNF274 GTRD no Liver (HepG2) 108376378
chr19 6056248 6058073 ZNF274 GTRD no Cervix (HeLa-S3) 108376379
chr19 6056302 6058132 ZNF274 GTRD no Bone Marrow (K562) 21844086
chr19 6056302 6058132 ZNF274 GTRD no Bone Marrow (K562) 108376380
chr19 6056307 6057658 ZNF274 GTRD no Bone Marrow (K562) 21844087
chr19 6056307 6057658 ZNF274 GTRD no Bone Marrow (K562) 108376381
chr19 6056317 6057858 ZNF274 GTRD no Liver (HepG2) 21844088
chr19 6056317 6057858 ZNF274 GTRD no Liver (HepG2) 108376382
chr19 6056362 6057145 TCF7L2 GTRD no Colon (HCT116) 108376383
Genes associated with rs78489413[chr19:6056539], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More