EnhancerDB
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  3. rs78544393[chr12:96828184]
Enhancers that have rs78544393[chr12:96828184]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 96795782 96855361 enh14922
Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Prostate (RWPE1) Muscle (A673) Heart
chr12 96828064 96828263 vista14578
VISTA
Transcript factors that have rs78544393[chr12:96828184]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 96827839 96828435 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053334
chr12 96827951 96828281 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053335
chr12 96828014 96828795 ZNF274 GTRD no Cervix (HeLa-S3) 21567741
chr12 96828014 96828795 ZNF274 GTRD no Cervix (HeLa-S3) 108053336
chr12 96828022 96828285 RUNX3 UCSC Txn Factor no Conserved 108053337
chr12 96828022 96828285 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053338
chr12 96828026 96828356 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053339
chr12 96828042 96828783 ZBTB33 GTRD no Lung (A549) 108053340
chr12 96828045 96828846 ZBTB33 GTRD no Lung (A549) 108053341
chr12 96828052 96828328 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053342
chr12 96828055 96828705 ZBTB33 GTRD no Lung (A549) 108053343
chr12 96828060 96828677 ZNF274 GTRD no Liver (HepG2) 108053344
chr12 96828069 96828329 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053345
chr12 96828075 96828193 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053346
chr12 96828082 96828571 ZNF274 GTRD no Bone Marrow (K562) 108053347
chr12 96828092 96828292 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108053348
chr12 96828120 96828504 ZBTB33 GTRD no Lung (A549) 108053349
chr12 96828128 96828220 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108053350
chr12 96828132 96828255 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108053351
chr12 96828135 96828589 ZNF274 GTRD no Liver (HepG2) 108053352
chr12 96828148 96828790 ZNF143 GTRD no Epithelial (MCF-7) 21567742
chr12 96828148 96828790 ZNF143 GTRD no Epithelial (MCF-7) 108053353
chr12 96828157 96828622 ZNF143 GTRD no Epithelial (MCF-7) 21567743
chr12 96828157 96828622 ZNF143 GTRD no Epithelial (MCF-7) 108053354
chr12 96828172 96828813 ZNF143 GTRD no Epithelial (MCF-7) 21567744
chr12 96828172 96828813 ZNF143 GTRD no Epithelial (MCF-7) 108053355
chr12 96828181 96828185 ESR1 TRANSFAC yes 82461725
chr12 96828181 96828185 ESR1 TRANSFAC yes 123070819
chr12 96828184 96828192 EHF JASPAR yes 82461726
chr12 96828184 96828192 EHF JASPAR yes 123070820
Genes associated with rs78544393[chr12:96828184], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More