EnhancerDB
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  3. rs78546940[chr15:40365975]
Enhancers that have rs78546940[chr15:40365975]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 40353665 40379655 enh16061
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr15 40365860 40366125 vista19719
VISTA
Transcript factors that have rs78546940[chr15:40365975]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 40365638 40366123 ZNF274 GTRD no Blood (GM12878) 21649881
chr15 40365638 40366123 ZNF274 GTRD no Blood (GM12878) 108133879
chr15 40365914 40366238 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21649882
chr15 40365914 40366238 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108133880
chr15 40365949 40366213 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21649883
chr15 40365949 40366213 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108133881
Genes associated with rs78546940[chr15:40365975], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr15 39542885 39547046 + C15orf54 ENSG00000175746.4 39542885 818929 Lung 0.288936 13794