Enhancers that have rs78559902[chr12:52542553]
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Transcript factors that have rs78559902[chr12:52542553]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033122
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033123
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033124
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033125
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546373
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033126
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033127
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033128
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033129
chr12 52541222 52542932 ZBTB33 GTRD no Lung (A549) 108033207
chr12 52541222 52542932 ZBTB33 GTRD no Lung (A549) 108033208
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 21546417
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 108033217
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 108033218
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 21546421
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 108033222
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 108033223
chr12 52541927 52542754 ZNF274 GTRD no Cervix (HeLa-S3) 21546427
chr12 52541927 52542754 ZNF274 GTRD no Cervix (HeLa-S3) 108033227
chr12 52541931 52542771 ZBTB33 GTRD no Lung (A549) 108033228
chr12 52541979 52542778 P63 GTRD no Skin (Keratinocyte) 21546428
chr12 52541979 52542778 P63 GTRD no Skin (Keratinocyte) 108033229
chr12 52542020 52542631 ZNF143 GTRD no Epithelial (MCF-7) 21546429
chr12 52542020 52542631 ZNF143 GTRD no Epithelial (MCF-7) 108033230
chr12 52542029 52542559 ZBTB33 GTRD no Lung (A549) 108033231
chr12 52542074 52542621 ZBTB33 GTRD no Lung (A549) 108033232
chr12 52542092 52542640 ZNF143 GTRD no Epithelial (MCF-7) 21546430
chr12 52542092 52542640 ZNF143 GTRD no Epithelial (MCF-7) 108033233
chr12 52542106 52542663 ZNF143 GTRD no Epithelial (MCF-7) 21546431
chr12 52542106 52542663 ZNF143 GTRD no Epithelial (MCF-7) 108033234
chr12 52542117 52542624 ZBTB33 GTRD no Lung (A549) 108033235
chr12 52542118 52542649 ZNF143 GTRD no Epithelial (MCF-7) 21546432
chr12 52542118 52542649 ZNF143 GTRD no Epithelial (MCF-7) 108033236
chr12 52542119 52542594 ZNF274 GTRD no Bone Marrow (K562) 108033237
chr12 52542153 52543073 ZBTB33 GTRD no Lung (A549) 108033238
chr12 52542166 52542635 ZNF274 GTRD no Bone Marrow (K562) 108033240
chr12 52542179 52542555 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546434
chr12 52542179 52542555 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033241
chr12 52542182 52542638 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546435
chr12 52542182 52542638 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033242
chr12 52542197 52542662 ZNF143 GTRD no Epithelial (MCF-7) 21546437
chr12 52542197 52542662 ZNF143 GTRD no Epithelial (MCF-7) 108033245
chr12 52542202 52542659 ZNF274 GTRD no Bone Marrow (K562) 108033246
chr12 52542221 52542597 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546438
chr12 52542221 52542597 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033247
chr12 52542249 52542653 ZNF143 GTRD no Epithelial (MCF-7) 21546439
chr12 52542249 52542653 ZNF143 GTRD no Epithelial (MCF-7) 108033248
chr12 52542253 52542765 ZNF143 GTRD no Epithelial (MCF-7) 21546440
chr12 52542253 52542765 ZNF143 GTRD no Epithelial (MCF-7) 108033249
chr12 52542264 52542768 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546441
chr12 52542264 52542768 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033250
chr12 52542300 52542876 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033251
chr12 52542317 52542637 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546442
chr12 52542317 52542637 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033252
chr12 52542324 52542912 EP300 UCSC Txn Factor no Conserved 108033253
chr12 52542324 52542912 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033254
chr12 52542325 52542629 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546443
chr12 52542325 52542629 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033255
chr12 52542350 52542720 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546444
chr12 52542350 52542720 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033256
chr12 52542354 52542818 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21546445
chr12 52542354 52542818 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108033257
chr12 52542359 52542853 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033258
chr12 52542363 52542693 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546446
chr12 52542363 52542693 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033259
chr12 52542365 52543015 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546447
chr12 52542365 52543015 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033260
chr12 52542369 52543029 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546448
chr12 52542369 52543029 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033261
chr12 52542380 52542644 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546449
chr12 52542380 52542644 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033262
chr12 52542384 52542607 SRF UCSC Txn Factor no Conserved 108033263
chr12 52542384 52542607 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033264
chr12 52542384 52543054 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108033265
chr12 52542391 52542767 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21546450
chr12 52542391 52542767 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108033266
chr12 52542399 52542809 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033267
chr12 52542411 52542951 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033268
chr12 52542416 52542672 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033269
chr12 52542458 52542942 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033270
chr12 52542464 52542860 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546451
chr12 52542464 52542860 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033271
chr12 52542468 52542748 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033272
chr12 52542469 52543039 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546452
chr12 52542469 52543039 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033273
chr12 52542471 52542855 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546453
chr12 52542471 52542855 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033274
chr12 52542482 52542832 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033275
chr12 52542483 52542900 ESR1 UCSC Txn Factor no Conserved 108033276
chr12 52542543 52542558 NR2C2 JASPAR yes 82405761
chr12 52542543 52542558 NR2C2 JASPAR yes 120922060
chr12 52542548 52542563 TFAP2A JASPAR yes 82405762
chr12 52542548 52542563 TFAP2C JASPAR yes 82405763
chr12 52542548 52542563 TFAP2A JASPAR yes 120922061
chr12 52542548 52542563 TFAP2C JASPAR yes 120922062
chr12 52542549 52542555 NFE2 TRANSFAC yes 82405764
chr12 52542549 52542555 NFE2 TRANSFAC yes 120922063
chr12 52542550 52542554 NFE TRANSFAC yes 82405765
chr12 52542550 52542554 NFE TRANSFAC yes 120922064
chr12 52542550 52542562 INSM1 JASPAR yes 82405766
chr12 52542550 52542562 TFAP2A JASPAR yes 82405767
chr12 52542550 52542562 TFAP2B JASPAR yes 82405768
chr12 52542550 52542562 TFAP2C JASPAR yes 82405769
chr12 52542550 52542562 INSM1 JASPAR yes 120922065
chr12 52542550 52542562 TFAP2A JASPAR yes 120922066
chr12 52542550 52542562 TFAP2B JASPAR yes 120922067
chr12 52542550 52542562 TFAP2C JASPAR yes 120922068
chr12 52542550 52542565 TFAP2A JASPAR yes 82405770
chr12 52542550 52542565 TFAP2A JASPAR yes 120922069
chr12 52542552 52542561 TFAP2A JASPAR yes 82405771
chr12 52542552 52542561 TFAP2A JASPAR yes 120922070
chr12 52542552 52542572 ESR1 JASPAR yes 82405772
chr12 52542552 52542572 ESR1 JASPAR yes 120922071

Genes associated with rs78559902[chr12:52542553], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 51487446 51566926 - TFCP2 ENSG00000135457.5 51566926 975627 Uterus 0.218267 12061