EnhancerDB
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  3. rs78754617[chr1:225943013]
Enhancers that have rs78754617[chr1:225943013]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs78754617[chr1:225943013]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225942359 225943098 SOX2 GTRD no Neural Stem Cells (H9) 21385748
chr1 225942403 225943099 SOX2 GTRD no Neural Stem Cells (H9) 21385749
chr1 225942418 225943035 SOX2 GTRD no Neural Stem Cells (H9) 21385751
chr1 225942501 225943092 SOX2 GTRD no Neural Stem Cells (H9) 21385753
chr1 225942518 225943013 SOX2 GTRD no Neural Stem Cells (H9) 21385754
chr1 225942521 225943041 SOX2 GTRD no Neural Stem Cells (H9) 21385755
chr1 225942824 225943328 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385763
chr1 225942942 225943458 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385764
chr1 225942974 225943350 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385765
chr1 225943002 225943372 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385766
chr1 225943006 225943346 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385767
chr1 225943010 225943015 GATA2 JASPAR yes 35767731
chr1 225943010 225943354 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385768
chr1 225943012 225943396 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385769
chr1 225943013 225943025 FOXI1 JASPAR yes 35767732
Genes associated with rs78754617[chr1:225943013], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More