EnhancerDB
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  3. rs78778110[chr1:225948668]
Enhancers that have rs78778110[chr1:225948668]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs78778110[chr1:225948668]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225948283 225949312 AR GTRD no Prostate (PC-3) 21385803
chr1 225948428 225949416 SOX2 GTRD no Neural Stem Cells (H9) 21385804
chr1 225948463 225949437 SOX2 GTRD no Neural Stem Cells (H9) 21385805
chr1 225948582 225949433 SOX2 GTRD no Neural Stem Cells (H9) 21385806
chr1 225948616 225949438 SOX2 GTRD no Neural Stem Cells (H9) 21385807
chr1 225948662 225948671 PITX3 JASPAR yes 35768621
chr1 225948662 225948672 GSC JASPAR yes 35768622
Genes associated with rs78778110[chr1:225948668], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More