EnhancerDB
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  3. rs78798402[chr1:203483066]
Enhancers that have rs78798402[chr1:203483066]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs78798402[chr1:203483066]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203482554 203483204 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369117
chr1 203482754 203483404 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369118
chr1 203482802 203484325 ZNF143 GTRD no Epithelial (MCF-7) 21369119
chr1 203482808 203484275 ZNF143 GTRD no Epithelial (MCF-7) 21369120
chr1 203482960 203483492 TCF7L2 GTRD no Colon (HCT116) 21369121
chr1 203483056 203483067 FOXP2 JASPAR yes 34634046
chr1 203483057 203483071 MTF1 JASPAR yes 34634048
chr1 203483058 203483066 FOXD1 JASPAR yes 34634055
chr1 203483058 203483066 FOXG1 JASPAR yes 34634056
chr1 203483058 203483066 FOXO3 JASPAR yes 34634057
chr1 203483059 203483609 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369122
chr1 203483066 203483077 EBF1 JASPAR yes 34634058
Genes associated with rs78798402[chr1:203483066], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More