EnhancerDB
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  3. rs78965352[chr1:185619983]
Enhancers that have rs78965352[chr1:185619983]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 185611645 185629075 enh12480
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Ovary Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs78965352[chr1:185619983]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 185619783 185620379 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21359472
chr1 185619976 185619986 HOXC10 JASPAR yes 33830699
chr1 185619976 185619986 HOXD11 JASPAR yes 33830700
chr1 185619976 185619987 HOXC11 JASPAR yes 33830701
chr1 185619976 185619987 HOXC12 JASPAR yes 33830702
chr1 185619976 185619987 HOXC13 JASPAR yes 33830703
chr1 185619976 185619987 HOXD12 JASPAR yes 33830704
Genes associated with rs78965352[chr1:185619983], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More