EnhancerDB
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  3. rs79180974[chr19:2488402]
Enhancers that have rs79180974[chr19:2488402]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2481141 2509475 enh4958
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs79180974[chr19:2488402]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2487107 2490254 TCF7L2 GTRD no Colon (HCT116) 108360382
chr19 2487601 2489790 TCF7L2 GTRD no Colon (HCT116) 108360383
chr19 2487661 2489954 TCF7L2 GTRD no Colon (HCT116) 108360384
chr19 2487763 2490018 TCF7L2 GTRD no Colon (HCT116) 108360385
chr19 2487775 2489823 TCF7L2 GTRD no Colon (HCT116) 108360386
chr19 2487933 2489965 TCF7L2 GTRD no Colon (HCT116) 108360387
chr19 2487990 2490105 ZNF274 GTRD no Blood (GM12878) 108360388
chr19 2488391 2488405 PLAG1 JASPAR yes 112065494
chr19 2488393 2488413 RREB1 JASPAR yes 112065495
chr19 2488395 2488415 RREB1 JASPAR yes 112065496
chr19 2488396 2488416 RREB1 JASPAR yes 112065497
chr19 2488397 2488417 RREB1 JASPAR yes 112065498
chr19 2488398 2488408 ZNF740 JASPAR yes 112065499
chr19 2488399 2488419 RREB1 JASPAR yes 112065500
chr19 2488400 2488410 SP1 JASPAR yes 112065501
chr19 2488400 2488421 ZNF263 JASPAR yes 112065502
chr19 2488401 2488421 RREB1 JASPAR yes 112065503
Genes associated with rs79180974[chr19:2488402], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More