EnhancerDB
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  3. rs79493426[chr12:52534916]
Enhancers that have rs79493426[chr12:52534916]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs79493426[chr12:52534916]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52534104 52534977 ZNF143 GTRD no Epithelial (MCF-7) 21546293
chr12 52534184 52535257 ZNF274 GTRD no Cervix (HeLa-S3) 21546294
chr12 52534313 52535240 ZNF143 GTRD no Epithelial (MCF-7) 21546295
chr12 52534362 52535003 ZNF143 GTRD no Epithelial (MCF-7) 21546296
chr12 52534364 52534935 ZNF143 GTRD no Epithelial (MCF-7) 21546297
chr12 52534372 52535248 ZNF143 GTRD no Epithelial (MCF-7) 21546298
chr12 52534466 52535048 ZNF143 GTRD no Epithelial (MCF-7) 21546304
chr12 52534518 52535010 ZNF143 GTRD no Epithelial (MCF-7) 21546307
chr12 52534525 52535133 ZNF274 GTRD no Liver (HepG2) 21546308
chr12 52534533 52534925 ZNF274 GTRD no Cervix (HeLa-S3) 21546310
chr12 52534546 52534939 ZNF143 GTRD no Epithelial (MCF-7) 21546311
chr12 52534554 52534955 ZNF143 GTRD no Epithelial (MCF-7) 21546313
chr12 52534901 52534916 HNF4A JASPAR yes 120921008
Genes associated with rs79493426[chr12:52534916], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More