EnhancerDB
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  3. rs79542534[chr12:52539645]
Enhancers that have rs79542534[chr12:52539645]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
chr12 52539319 52539712 vista13443
VISTA
Transcript factors that have rs79542534[chr12:52539645]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52538139 52539820 ZBTB33 GTRD no Lung (A549) 108033090
chr12 52538170 52539881 ZBTB33 GTRD no Lung (A549) 108033091
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 21546353
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 108033092
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 108033093
chr12 52538583 52539717 ZBTB33 GTRD no Lung (A549) 108033095
chr12 52538625 52539767 ZNF143 GTRD no Epithelial (MCF-7) 21546355
chr12 52538625 52539767 ZNF143 GTRD no Epithelial (MCF-7) 108033096
chr12 52538740 52539765 ZNF143 GTRD no Epithelial (MCF-7) 21546357
chr12 52538740 52539765 ZNF143 GTRD no Epithelial (MCF-7) 108033098
chr12 52538787 52539651 ZBTB33 GTRD no Lung (A549) 108033100
chr12 52538810 52539709 ZBTB33 GTRD no Lung (A549) 108033101
chr12 52538834 52539692 ZBTB33 GTRD no Lung (A549) 108033103
chr12 52538851 52539707 ZNF274 GTRD no Cervix (HeLa-S3) 21546359
chr12 52538851 52539707 ZNF274 GTRD no Cervix (HeLa-S3) 108033104
chr12 52538924 52539704 ZBTB33 GTRD no Lung (A549) 108033109
chr12 52538981 52539866 ZNF143 GTRD no Epithelial (MCF-7) 21546364
chr12 52538981 52539866 ZNF143 GTRD no Epithelial (MCF-7) 108033111
chr12 52539001 52539881 ZBTB33 GTRD no Lung (A549) 108033115
chr12 52539369 52539739 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546372
chr12 52539369 52539739 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033121
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033122
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033123
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033124
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033125
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546373
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033126
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033127
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033128
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033129
chr12 52539471 52539935 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546374
chr12 52539471 52539935 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033130
chr12 52539551 52539869 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546375
chr12 52539551 52539869 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033131
chr12 52539637 52539651 XBP1 JASPAR yes 82405591
chr12 52539637 52539651 XBP1 JASPAR yes 120921650
chr12 52539638 52539652 CREB3 JASPAR yes 82405592
chr12 52539638 52539652 CREB3 JASPAR yes 120921651
chr12 52539643 52539648 ATF1 TRANSFAC yes 82405593
chr12 52539643 52539648 ATF1 TRANSFAC yes 120921652
Genes associated with rs79542534[chr12:52539645], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More