EnhancerDB
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  3. rs7955461[chr12:52544822]
Enhancers that have rs7955461[chr12:52544822]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs7955461[chr12:52544822]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52544032 52544931 TCF7L2 GTRD no Colon (HCT116) 21546459
chr12 52544086 52544994 ZNF143 GTRD no Epithelial (MCF-7) 21546460
chr12 52544099 52545036 ZNF143 GTRD no Epithelial (MCF-7) 21546462
chr12 52544121 52545026 TCF7L2 GTRD no Colon (HCT116) 21546463
chr12 52544165 52545010 ZNF143 GTRD no Epithelial (MCF-7) 21546464
chr12 52544175 52545075 ZNF143 GTRD no Epithelial (MCF-7) 21546465
chr12 52544176 52544913 ZNF143 GTRD no Epithelial (MCF-7) 21546466
chr12 52544180 52545048 ZNF143 GTRD no Epithelial (MCF-7) 21546467
chr12 52544213 52544997 ZNF143 GTRD no Epithelial (MCF-7) 21546468
chr12 52544269 52545155 ZNF143 GTRD no Epithelial (MCF-7) 21546469
chr12 52544309 52545184 ZNF274 GTRD no Cervix (HeLa-S3) 21546470
chr12 52544360 52545026 ZNF143 GTRD no Epithelial (MCF-7) 21546471
chr12 52544406 52544959 ZNF143 GTRD no Epithelial (MCF-7) 21546472
chr12 52544442 52544824 ZNF274 GTRD no Cervix (HeLa-S3) 21546473
chr12 52544489 52544841 ZNF274 GTRD no Liver (HepG2) 21546474
chr12 52544541 52545035 ZNF143 GTRD no Epithelial (MCF-7) 21546475
chr12 52544590 52544860 ZNF143 GTRD no Epithelial (MCF-7) 21546476
chr12 52544821 52544827 ESR1 TRANSFAC yes 120922415
Genes associated with rs7955461[chr12:52544822], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More